Potassco, the Potsdam Answer Set Solving Collection bundles tools for Answer Set Programming developed at the University of Potsdam, among them, the answer set solver clasp, the grounder gringo, and their combinations clingo and iclingo.
Potassco, the Potsdam Answer Set Solving Collect...
A_purva is a Contact Map Overlap maximization (CMO) solver. Given two protein structures represented by two contact maps, A_purva computes the amino-acid alignment which maximize the number of common contacts.
A_purva is a Contact Map Overlap maximization (CMO) solver. Given two protei...
Bioquali est un logiciel de validation et de prédiction de données qualitatives couplées à un réseau biologique représenté par un graphe d'interactions.
Bioquali est un logiciel de validation et de prédiction de données qualitatives couplées à un réseau biologique représenté par un gra...
Boost provides free peer-reviewed portable C++ source libraries. We emphasize libraries that work well with the C++ Standard Library. Boost libraries are intended to be widely useful, and usable across a broad spectrum of applications
Boost provides free peer-reviewed portable C++ sour...
Classification hiérarchique de l’analyse de la vraisemblance des liens relationnels en cas de données hétérogènes. Le programme CHAVLH propose une chaîne complète de classification ascendante hiérarchique permettant de classifier aussi bien les individus que les variables descriptives.
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Common Lisp is a high-level, general-purpose, object-oriented, dynamic, functional programming language.
Common Lisp is a high-level, general-purpose, object-oriented, dynamic, functional programming language.
ClustalW2 is a general purpose multiple sequence alignment program for DNA or proteins. It attempts to calculate the best match for the selected sequences, and lines them up so that the identities, similarities and differences can be seen.
www.clustal.org/clustal2
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Software contains clustering routines that can be used to analyze gene expression data. Routines for hierarchical (pairwise simple, complete, average, and centroid linkage) clustering, k-means and k-medians clustering, and 2D self-organizing maps are included.
Software contains cluster...
DIALIGN is a software program for multiple sequence alignment. DIALIGN constructs pairwise and multiple alignments by comparing entire segments of the sequences. No gap penalty is used.
DIALIGN is a software program for multiple sequence alignment. DIALIGN constructs pairwise and multi...
DRMAA is an interface standard for job submission and control to Distributed Resource Manager (DRM) systems such as Condor, PBS/OpenPBS/Torque, Platform LSF, Sun's N1 Grid Engine and others.
DRMAA is an interface standard for job submission and control to Distributed Resource Manager (...
ESPRIT is a standard implementation of complete-linkage based hierarchical clustering method. It can conformably process several tens of thousands sequences using a desktop computer. They have used the algorithm to process 1.1M human gut sequences using a small computer cluster consisti...