• 资源导航
701. fastphase
Software for haplotype reconstruction, and estimating missing genotypes from population data
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702. FASTX-Toolkit
A collection of tools for short reads fasta/fastq file preprocessing.
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703. FIRE
A package for regulatory DNA and RNA motif discovery in genomes
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704. frappe
A program for estimating individual ancestry and admixture proportions using high-density SNP data
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705. Fugue
Package for recognizing distant homologues of proteins by sequence-structure comparison. Initialised with command fugue
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706. Genehunter
Program to do multipoint linkage analysis; command gh
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707. Glimmer
通过build-icm程序对该物种已知的基因序列生成一个马尔可夫模型参数集合，再应用这个参数集对DNA序列进行基因预测。
标签：基因预测,推荐
708. GoMiner
GoMiner is a tool for biological interpretation of omic data including data from gene expression microarrays. It is run in X-Windows with the command gominer.
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709. gromacs
A molecular dynamics simulation package
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710. HMMER
Sequence analysis with profile Hidden Markov Models. Can search our BLAST format databases. HMMER is an implementation of profile HMM methods for sensitive database searches using multiple sequence alignments as queries. HMMER is an implementation of profile HMM methods for sensitive ...
标签：Sequence motif recognition, Sequence motif discovery
711. hyphy
A scriptable package for evolutionary modelling.
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712. ihs
Integrated Haplotype Score test
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713. im, ima and ima2
Programs for population genetic analysis
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714. instruct
An alternative to structure (see below)
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715. IPRSCAN
Interface to Interpro database (see below). Can be used for one or more types of search at a time eg transmembrane protein, signal protein, Pfam, SMART. Command /biosoft/iprscan/bin/iprscan InterPro is a collaborative project aimed at providing an integrated layer on top of the most co...
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716. IQPNNI
(Important Quartet Puzzling and NNI Operation) program to reconstruct a phylogenetic tree from DNA or amino acid sequence data.
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717. Jalview
Multiple sequence alignment editor; can read MSF, CLUSTAL, FASTA, BLC,MSP and PIR formats. Requires X-Windows.
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718. jmodeltest
A phylogeny program for selecting the model of nucleotide substitution that best fits the data
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719. joy
Program to annotate protein sequence alignments with 3D structural features
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720. Linkage analysis
A range of linkage analysis software started with the command linkage previously is now installed on demand
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