"BioPerl, a community effort to produce Perl code which is useful in biology. "
Set of modules to help write bioinformatics Perl scripts, with some functional scripts as well
Genometa is a Java based local bioinformatics program which allows rapid analysis of metagenomic short read datasets. Millions of short reads can be accurately analysed within minutes and visualised in the browser component. A large database of diverse bacteria and archaea has been cons...
BioSmalltalk provides an environment to build bioinformatics scripts and applications using the most powerful object technology as of today, the Smalltalk programming environment
标签：Sequence analysis,Phylogenetics, Population genetics, Protein structures
SolexaTools is a project to create a tool set to work with a Solexa genome sequencer. It includes multiple components including a LIMS system, pipeline and other tools to support end-users and researchers setting up a Solexa environment.
MPscan (multi-pattern scan) is a program for mapping short reads (<30bp) exactly on a set of reference sequences (eg, a genome) without indexing the reference. MPscan performs only exact mapping (no substitution, nor indels), is fast (optimal complexity), and easy to use.
Samscope is a lightweight SAM/BAM file viewer that makes visually exploring next generation sequencing data as intuitive as Google Maps. Samscope uses multiple layers to simultaneously (or sequentially) view SAM/BAM related features like coverage or allele frequency, or ChIP-SEQ feature...
A5 is an integrative pipeline for genome assembly that automates sequence data cleaning, error correction, assembly, and quality control by chaining a number of programs together with additional custom algorithms.