• 资源导航
201. ZINBA
Identifies genomic regions enriched in a variety of ChIP-seq and related next-generation sequencing experiments
标签：ChIP-Seq, DNA-Seq
202. SAMStat
SAMStat is an efficient C program for displaying statistics of large sequence files.
标签：
203. TopHat-Fusion
Detection of fusion genes in RNA-Seq data
标签：Fusion transcripts
204. FREEC
A tool for control-free copy number alteration (CNA) detection using deep-sequencing data, particularly useful for cancer studies.
标签：Copy number estimation
205. SRMA
SRMA is a short read micro re-aligner for next-generation high throughput sequencing data.
标签：SNP discovery, InDel discovery
206. CopySeq
CopySeq analyzes the depth-of-coverage of whole genome resequencing data to predict CNVs and to infer quantitative locus copy-number genotypes.
标签：Structural variation, Copy number estimation, Genotyping,Personal genomics
207. BEADS
ChIP-Seq data normalization for Illumina
标签：ChIP-Seq
208. Hybrid-SHREC
Improves sequence data quality using information from multiple platforms.
标签：
209. SuccinctAssembly
Tools to build & analyze compact versions of de Bruijn graphs.
标签：De-novo assembly
210. CnD
Program to detect copy number variation in inbred mouse strains
标签：Copy number estimation
211. Jellyfish
Fast, memory-efficient k-mer counting algorithm
标签：
212. Figaro
Figaro is a software tool for identifying and removing the vector from raw DNA sequence data without prior knowledge of the vector sequence. Figaro is a software tool for identifying and removing the vector from raw DNA sequence data without prior knowledge of the vector sequence.
标签：Sequencing
213. CARPET
A web‐based package for the analysis of ChIP‐chip and expression tiling data
标签：ChIP-on-chip
214. DSAP
Automated multiple-task web service designed to provide a total solution to analyzing deep-sequencing small RNA datasets generated by next-generation sequencing technology
标签：Small RNA transcriptome, MiRNA
215. MiRNAkey
A software pipeline for the analysis of microRNA Deep Sequencing data
标签：MiRNA
216. SLOPE
Detects structural variants from targeted short DNA reads
标签：Structural variation, Targeted resequencing
217. Gnumap
The Genomic Next-generation Universal MAPper (gnumap) is a program designed to accurately map sequence data obtained from next-generation sequencing machines (specifically that of Solexa/Illumina) back to a genome of any size. Currently, gnumap is designed to be used with the _int.txt d...
标签：
218. TileQC
TileQC: a system for tile-based quality control of Solexa data.
标签：
219. PanGEA
Tool which enables a fast and user-friendly analysis of allele specific gene expression using the 454 technology.
标签：RNA-Seq, Allele-specific transcription, SNP discovery
220. CANGS
CANGS is a flexible and user-friendly utility to trim sequences, filter low quality sequences, and produce input files for further downstream analyses for 454 sequences. CANGS can be used to assign the taxonomic grouping based on similarity with sequences from the NCBI database a u...
标签：Metagenomics, Phylogenetics
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