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561. GenomeTools
The GenomeTools genome analysis system is a free collection of bioinformatics tools for genome informatics.1.3.6
标签：Genomics
562. GenoMiner
A proprietary NGS analysis solution. Powerful hardware comes with preinstalled software, organized in workflows.
标签：Reference assembly, De-novo assembly, ChIP-Seq, RNA-Seq
563. GenoViewer
A feature rich NGS assembly viewer/browser.
标签：
564. GensearchNGS
A user friendly framework for re-sequencing in a diagnostics context: searching for mutations/variants, especially on well known genes.
标签：Targeted resequencing
565. GenVision
GenVision is a genomic visualization software package that is fully integrated with Lasergene and is designed to support easy generation of publication quality graphics and maps.
标签：Genomics
566. GigaBayes
A short-read SNP and short-INDEL discovery program.
标签：Genomics, SNP discovery
567. Goby framework
Goby is a next-gen data management framework designed to facilitate the implementation of efficient next-gen data analysis pipelines.
标签：RNA-Seq
568. Golden Helix
Golden Helix is a bioinformatic software provider and analytic service provider. The core of its business is about empowering scientists to discover more, discover it easier, and to come away with valid and reproducible bioinformatics results. The software, SNP & Variation Suite, is a s...
标签：Epigenomics, Genomics, DNA-Seq, SNP discovery, Whole Genome Resequencing Analysis,Copy number estimation,Quality Control
569. Goseq
An R package to detect Gene Ontology (GO) categories and other categories of genes (such as KEGG pathways) that are over/under represented in an RNA-seq data.
标签：RNA-Seq Quantitation
570. HeliSphere
Open-source LINUX software package intended for use in analyzing data produced by the HeliScope Single Molecule Sequencer.
标签：Genomics, Whole Genome Resequencing, RNA-Seq, SNP discovery
571. HINT
HMM-based Identification of TF Footprints
标签：Regulatory genomics,Regulatory genomics epigenomics, Transcription Factor Binding Site identification
572. HTSeq
Python framework to process and analyse high-throughput sequencing (HTS) data
标签：
573. IDBA
IDBA (Iterative De Bruijn graph short read Assembler) is a short read assembler based on iterative De Bruijn graph. It is developed under 64-bit Linux, but should be suitable for all unix-like system
标签：De-novo assembly
574. Illuminate
Analytics toolkit in Python for Illumina HiSeq and MiSeq metrics
标签：Genomics
575. IMAGE
“Iterative Mapping and Assembly for Gap Elimination”. IMAGE closes gaps in a draft assembly using Illumina paired-end reads.
标签：
576. Inchworm
Employs the Kmer graph method to reconstruct (in many cases full-length) transcripts from Illumina RNA-Seq (preferrably strand-specific) reads.
标签：RNA-Seq, De novo transcriptome assembly
577. Integrated Genome Browser
Visualization software for next-generation genomics
标签：Genomics
578. IOmics
iOmics is a cloud based workflow analysis framework for managing, analyzing and visualizing NGS data.
标签：Genomics, Transcriptomics,Epigenomics, RNA-Seq, Exome and Whole genome variant detection
579. IQSeq
Integrated Isoform Quantification Analysis based on A Partial Sampling Framework
标签：RNA-Seq Quantitation,Alternative Splicing
580. ISAAC
ISAAC comprises of genome aligner and variant caller, by Illumina.
标签：
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