资源导航

401. OLego: OLego is a program specifically designed for de novo spliced mapping of mRNA-seq reads. OLego adopts a seeding and extension scheme, and does not rely on a separate external mapper. It achieves high sensitivity of junction detection by using very small seeds (12-14 nt), efficiently mapp...; 标签：Genomics, RNA-Seq, RNA-Seq Alignment
402. Error Correction Evaluation Toolkit: Evaluation of error correction results; 标签：Sequence Quality Control
403. DCLIP: dCLIP is a Perl program for discovering differential binding regions in two comparative CLIP-Seq (HITS-CLIP, PAR-CLIP or iCLIP) experiments.; 标签：CLIP-Seq, HITS-CLIP, PAR-CLIP,ICLIP
404. ViralFusionSeq: Accurately discover viral integration events and fusion transcripts by the use of soft-clipping information, read-pair analysis, and targeted de novo assembly; 标签：Genomics, Fusion genes, Fusion transcripts, Viral genomics
405. METAGENassist: User-friendly, web-based analytical pipeline for comparative metagenomic studies. Input can be derived from either 16S rRNA data or NextGen shotgun sequencing.; 标签：Metagenomics
406. RDiff: rDiff is an open source tool for accurate detection of differential RNA processing from RNA-Seq data. It implements two statistical tests to detect changes of the RNA processing between two samples. rDiff.parametric is a powerful test, which can be applied for well annotated organisms t...; 标签：Alternative Splicing, RNA-Seq,Transcriptomics
407. SWT: WashU Sliding Window Tool for detecting copy number variants from Illumina/Solexa data.; 标签：Copy number estimation
408. CEQer: CEQer (Comparative Exome Quantification analyzer) is a graphical, event-driven tool for copy number abnormalities/allelic-imbalance coupled analysis of whole-exome sequencing data. By using case-control matched exome data, CEQer performs a comparative digital exonic quantification to ge...; 标签：Exome analysis
409. MiRCat: Predicts mature miRNAs and their precursors from an sRNA dataset and a genome.; 标签：General bioinformatics (pipeline)
410. XMatchView: A visual tool for analyzing cross_match alignments.; 标签：
411. Partek Genomics Suite: Easy to use software providing A to Z analysis for all Next Generation Sequencing and Microarray data.; 标签：Allele-specific transcription,RNA-Seq Quantitation,Epigenomics, Functional Genomics, ChIP-Seq,Alternative Splicing, SNP discovery, Small RNA transcriptome
412. Hairpin Annotation: Generates a secondary structure from an RNA sequence and highlights regions of interest using RNAplot; 标签：General bioinformatics (pipeline)
413. SwDMR: swDMR: a sliding window approach to identify differentially methylated regions based on bisulfite sequencing; 标签：Bisulfite Sequencing,Differential methylated regions identification
414. .NET BIO: ".NET Bio is an open source library of common bioinformatics functions, intended to simplify the creation of life science applications. The core library implements a range of file parsers and formatters for common file types, connectors to commonly-used web services such as NCBI BLAST, ...; 标签：Sequence analysis
415. CLEVER: CLEVER is a tool to discover structural variations such as (larger) insertions and deletions in genomes from paired-end sequencing reads.; 标签：Genomics, Structural variation, Copy number estimation
416. VelvetOptimiser: VelvetOptimiser is a multi-threaded Perl script for automatically optimising the parameter options for the Velvet de novo sequence assembler.; 标签：De-novo assembly
417. Mlgt: Processing and analysis of high throughput, long-read (e.g. Roche 454) sequences generated from multiple loci and multiple biological samples. Sequences are assigned to their locus and sample of origin, aligned and trimmed. Where possible, genotypes are called and variants mapped to kno...; 标签：Genotyping, Targeted resequencing, Resequencing
418. BLAST Ring Image Generator: "BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. "; 标签：Comparative genomics
419. PacBio conversion tools: Tools to convert from PacBio HDF5 format to other commonly used formats & libraries to read HDF5 from Java & R; 标签：
420. CORAL (Contig Ordering Algorithm): An algorithm has been developed to order fingerprinted clones within contigs.; 标签：

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