资源导航

21. BBSeq: Tool for analyzing RNA-Seq data to analyze gene expression; 标签：RNA-Seq Quantitation
22. FDM: Detects differential transcription in RNA-Seq data; 标签：RNA-Seq Quantitation
23. SpliceTrap: SpliceTrap is a statistic tool for quantifying exon inclusion ratios in paired-end RNA-seq data. Instead of full transcript quantification, SpliceTrap approaches to exon inclusion level estimation as a Bayesian inference problem. For every exon it quantifies the extent to which it is in...; 标签：Alternative Splicing, RNA-Seq Quantitation, RNA-Seq
24. Bort: Bort parses Blast output and quantifies hits by contig and read counts.; 标签：RNA-Seq Quantitation
25. RECOUNT: Probabilistic tag count error correction for next generation sequencing data (Solexa/Illumina).; 标签：RNA-Seq Quantitation
26. Partek Genomics Suite: Easy to use software providing A to Z analysis for all Next Generation Sequencing and Microarray data.; 标签：Allele-specific transcription,RNA-Seq Quantitation,Epigenomics, Functional Genomics, ChIP-Seq,Alternative Splicing, SNP discovery, Small RNA transcriptome
27. CummeRbund: Allows for persistent storage, access, exploration, and manipulation of Cufflinks high-throughput sequencing data. In addition, provides numerous plotting functions for commonly used visualizations.; 标签：RNA-Seq Quantitation
28. Goseq: An R package to detect Gene Ontology (GO) categories and other categories of genes (such as KEGG pathways) that are over/under represented in an RNA-seq data.; 标签：RNA-Seq Quantitation
29. IQSeq: Integrated Isoform Quantiﬁcation Analysis based on A Partial Sampling Framework; 标签：RNA-Seq Quantitation,Alternative Splicing
30. mapsembler: Mapsembler is a targeted assembly software. It takes as input a set of NGS raw reads and a set of input sequences (starters). It first determines if each starter is read-coherent, e.g. whether reads confirm the presence of each starter in the original sequence. Then for each read-cohere...; 标签：Metagenomics, Transcriptomics,DNA-Seq, RNA-Seq Quantitation,Targeted assembly
31. MsQuant: MSQuant is a tool for quantitative proteomics/mass spectrometry and processes spectra and LC runs to find quantitative information about proteins and peptides. Though automated it also allows manual inspection and change. MSQuant’s main purpose is to make quantitation of proteins and pe...; 标签：Quantitation
32. Census: A quantitative analysis software tool for mass spectrometry-based proteomics. Sung Kyu Park, John D Venable, Tao Xu, John R Yates III, Nature Methods, 2008, 5, 319-322.; 标签：Quantitation

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