Pipeline that identifies a core set of eukaryotic genes. It uses WU-BLAST, HMMER 2, geneid and Wise2. This may help check the completeness of a genome assembly. It could be used to train eg snap. May be used in conjunction with Maker. Local wrapper command run_cegma takes same arguments as cegma

CEGMA (Core Eukaryotic Genes Mapping Approach) is a pipeline for building a set of high reliable set of gene annotations in virtually any eukaryotic genome.