FusionAnalyser is a new graphical, event-driven tool dedicated to the identification of driver fusion rearrangements in human cancer through the analysis of paired-end high-throughput transcriptome sequencing data. Tested on Illumina. Requires short, paired-end sequences.
ArrayStar is an easy-to-use gene expression analysis software package that offers powerful visualization and statistical tools to help you analyze your microarray data.
PileLine is a flexible command-line toolkit for efficient handling, filtering, and comparison of genomic position (GP) files produced by next-generation sequencing experiments. PileLineGUI adds a graphical interface.
SlideSort finds all similar pairs from a string pool in terms of edit distance. Using an efficient pattern growth algorithm, SlideSort discovers chains of common k-mers to narrow down the search.
BisSNP is a package based on the Genome Analysis Toolkit (GATK) map-reduce framework for genotyping in bisulfite treated massively parallel sequencing (Bisulfite-seq, NOMe-seq and RRBS) on Illumina platform. It uses bayesian inference with either manually specified or automatically esti...
标签：SNP discovery, Genotyping, DNA methylation, Bisulfite Sequencing
MapNext provides four mainly analysis: (i) unspliced alignment and clustering of reads, (ii) spliced alignment of transcriptomic reads, (iii) SNP detection and calculation of SNP frequency from population sequences, and (iv) storage of result data into database to make it available for ...
Python extension to BEDTools that allows use of all BEDTools programs directly from Python, as well as feature-by-feature manipulation, automatic handling of temporary files, and more.