21. Breakway
Breakway is a suite of programs that take aligned genomic data and report structural variation breakpoints.
标签:Whole Genome Resequencing,Genomics, Structural variation, InDel discovery
22. DNA Baser
Tool for manual and automatic sequence assembly, analysis, editing, sample processing, metadata integration, file format conversion and mutation detection.
标签:Structural variation, SNP discovery
23. DNAA
DNAA (DNA Analysis) software for analysis of Next-Generation Sequencing data.
标签:Structural variation, SNP discovery, DNA methylation
24. Geneious
Search, organize and analyze genomic and protein information of any size via desktop program that provides publication ready images to enhance the impact of your research.
标签:Phylogenetics, Sequence analysis, De-novo assembly,Genomics, Population genetics,Metagenomics, Structural variation, RNA-Seq,Epigenomics
25. Genome Trax
Genome Trax™ enables you to identify human genome variations of functional significance by mapping your NGS data to known elements such as disease mutations and regulatory sites.
标签:Structural variation,Regulatory genomics
26. Meerkat
Meerkat is designed to identify structure variations (SVs) from paired end high throughput sequencing
标签:Structural variation
27. Ngs-pipeline
Complete solution for human re-sequencing projects
标签:Personal genomics,Epigenomics, Structural variation
28. PEMer
The package is composed of three modules, PEMer workflow, SV-Simulation and BreakDB. PEMer workflow is a sensitive software for detecting SVs from paired-end sequence reads. SV-Simulation randomly introduces SVs into a given genome and generates simulated paired-end reads from the ‘nove...
标签:Structural variation
29. ReSeqSim
A simulation toolbox that will help us optimize the combination of different technologies to perform comparative genome re-sequencing, especially in reconstructing large structural variants (SVs).
标签:Structural variation
30. Syapse
Syapse is a platform and application suite for bringing together omics and clinical data.
标签:Allele-specific transcription,DNA methylation, DNA-Seq,InDel discovery, SNP discovery, Structural variation, RNA-Seq, Small RNA transcriptome, ChIP-Seq,Comparative genomics,Comparative transcriptomics,Epigenomics, Genomics,Personal genomics, Population ge