标签云

Alignment Allele-specific transcription Alternative Splicing Barcoding Bisulfite Sequencing Cancer biology ChIP-exo ChIP-on-chip ChIP-Seq Clone verification Comparative genomics Comparative transcriptomics Comparison Conversion Copy number estimation De novo assembly De novo sequencing De-novo assembly DNA methylation DNA-Seq Epigenomics Evaluation and validation Exome and whole genome variant detection Framework Functional Genomics Gene expression Gene regulatory network analysis General bioinformatics (pipeline) Genomic Assembly Genomic Assembly Evaluation Genomic Assembly Validation Genomics Identification InDel discovery Infrastructure Mapping Mass Accuracy Metagenomics Metatranscriptomics Next Generation Sequencing Nucleic acid sequence analysis Nucleic acid structure comparison Pairwise structure alignment Peptide identification (DB) Peptide identification (De novo) Peptide identification (lib match) Personal genomics Phylogenetics Population genetics Population Genomics Protein Inference Quality Control Quantitation Raw Data Raw Data / Conversion Read alignment Reference assembly Regulatory genomics Regulatory genomics epigenomics Resequencing Results processing RNA structure prediction RNA-Seq RNA-Seq Alignment RNA-Seq Quantitation Search and retrieval Sequence analysis Sequence database search Sequence functional annotation Sequence motif discovery Sequence motif recognition Sequence Quality Control Sequencing Small RNA transcriptome SNP Annotation SNP discovery SNPs Somatic mutations Structural variation Targeted assembly Targeted resequencing Transcription Factor Binding Site identification Transcriptome Viral genomics Whole gene prediction Whole Genome Resequencing Whole Genome Resequencing Analysis  Alignment  Alternative Splicing  Bisulfite Sequencing  ChIP-on-chip  ChIP-Seq  De novo assembly  De novo transcriptome assembly  De-novo assembly  DNA methylation  DNA-Seq  Exome and Whole genome variant detection  Fusion finding  Fusion genes  Fusion transcripts  Genomic Assembly  Genomics  Genotyping  High-throughput sequencing  In vitro selection  InDel discovery  Mapping  Metagenomics  MiRNA  MiRNA-Seq  Motif analysis  Next Generation Sequencing  Personal genomics  Phylogenetics  Population genetics  Population genomics  Read alignment  Reference assembly  Regulatory genomics  RNA Seq analysis  RNA-Seq  RNA-Seq Quantitation  Sequence analysis  Sequence annotation  Sequencing  Small RNA transcriptome  SNP discovery  Structural variation  Targeted resequencing  Transcription Factor Binding Site identification  Transcriptomics  Whole Genome Resequencing  Whole Genome Resequencing Analysis 基因组注释 基因预测 多重序列比对 多重比对 序列拼接 推荐 比较基因组 重复序列
1. MiRDeep
Discovering known and novel miRNAs from deep sequencing data
标签:MiRNA
2. CLCbio Genomics Workbench
De novo and reference assembly SNP and small indel detection and annotation.
标签:Genomics, Whole Genome Resequencing, De-novo assembly, SNP discovery, InDel discovery, ChIP-Seq, RNA-Seq,MiRNA, Transcriptomics
3. MiRanalyzer
Web-server for identifying and analyzing miRNA in next-gen sequencing experiments
标签:MiRNA
4. CleaveLand
A pipeline for using degradome data to find cleaved small RNA targets.
标签:MiRNA
5. Novocraft
Novoalign is a program for mapping short reads from the Illumina/SOLiD sequencing platform(s) to a reference genome. Package for aligning short reads to reference genomes
标签:Genomics, Whole Genome Resequencing, RNA-Seq Alignment, ChIP-Seq, MiRNA
6. SeqBuster
SeqBuster, a web-based bioinformatic tool offering a custom analysis of deep sequencing data at different levels, with special emphasis on the analysis of miRNA variants or isomiRs and the discovering of new small RNAs.
标签:Small RNA transcriptome, MiRNA
7. MirTools
Web server for microRNA profiling and discovery based on high-throughput sequencing
标签:Small RNA transcriptome, MiRNA
8. E-miR
Perl tools for processing miRNA sequencing data
标签:Small RNA transcriptome, MiRNA
9. DSAP
Automated multiple-task web service designed to provide a total solution to analyzing deep-sequencing small RNA datasets generated by next-generation sequencing technology
标签:Small RNA transcriptome, MiRNA
10. MiRNAkey
A software pipeline for the analysis of microRNA Deep Sequencing data
标签:MiRNA
11. Chipster
User-friendly NGS data analysis software with built-in genome browser and workflow functionality. Chipster includes tools for ChIP-seq, RNA-seq, miRNA-seq and MeDIP-seq analysis, and functionality for exome-seq and CGH-seq will soon be added.
标签:ChIP-Seq, RNA-Seq, MiRNA-Seq,MeDIP-Seq
12. QSeq
QSeq is DNASTAR's Next-Gen application for RNA-Seq,ChIP-Seq, and miRNA alignment and analysis.
标签:ChIP-Seq, RNA-Seq, MiRNA