Lasergene is a comprehensive DNA and protein sequence analysis software suite comprised of seven applications which include functions ranging from sequence assembly and SNP detection, to automated virtual cloning and primer design.
标签：Alignment, De novo sequencing,De-novo assembly, Genomics,InDel discovery, Integrated solution, Mapping,Phylogenetics, Protein structure analysis, Read alignment, SNP discovery,Sequence analysis,Transcription Factor Binding Site identification
Peppy performs all necessary tasks of six-frame proteogenomic searches of LC-MS/MS data on a genome. This includes genome segmentation, translation and FDR analysis -- all done automatically with no need for intervention. Six-frame searches allow the discovery of novel proteins or prote...
MS/MS protein identification software, available for Linux and Windows, Phenyx is scallable in terms of computing nodes and supports many input data formats. Search results can be exported from MS Excel to XML formats
henyx enables proteomics scientists to 1) submit MS/MS data and iden...
SEQUEST 3G is the latest, next-generation SEQUEST standard specifically developed and optimized for translational proteomic applications involving phosphorylation and other post-translational modifications (PTMs). SEQUEST 3G defines a single common standard for similarity scores, search...
This software has a very simple, sophisticated application programming interface (API): it simply takes an XML file of instructions on its command line, and outputs the results into an XML file, which has been specified in the input XML file. Unlike some earlier generation search engine...
The Open Mass Spectrometry Search Algorithm [OMSSA] is an efficient search engine for identifying MS/MS peptide spectra by searching libraries of known protein sequences. OMSSA scores significant hits with a probability score developed using classical hypothesis testing, the same statis...