41. Golden Helix
Golden Helix is a bioinformatic software provider and analytic service provider. The core of its business is about empowering scientists to discover more, discover it easier, and to come away with valid and reproducible bioinformatics results. The software, SNP & Variation Suite, is a s...
标签:Epigenomics, Genomics, DNA-Seq, SNP discovery, Whole Genome Resequencing Analysis,Copy number estimation,Quality Control
42. HINT
HMM-based Identification of TF Footprints
标签:Regulatory genomics,Regulatory genomics epigenomics, Transcription Factor Binding Site identification
43. KBASE
"KBase provides a computational framework and tools for integrating and analyzing large, diverse datasets generated by the scientific community to advance predictive understanding, manipulation, and design of biological processes in an environmental context. The purpose of KBase is to e...
标签:Comparative genomics
44. MrCaNaVaR
mrCaNaVaR is a copy number caller that analyzes the next-generation sequence mapping read depth to discover large segmental duplications and deletions. It also has the capability of predicting absolute copy numbers of genomic intervals.
标签:Genomics, Personal genomics,Copy number estimation
45. Ngs-pipeline
Complete solution for human re-sequencing projects
标签:Personal genomics,Epigenomics, Structural variation
46. PeakAnalyzer
PeakAnalyzer is a set of applications for processing ChIP signal peaks.
标签:Functional Genomics
47. PoPoolation2
PoPoolation2 allows to compare allele frequencies for SNPs between two or more populations and to identify significant differences. PoPoolation2 requires next generation sequencing data of pooled genomic DNA (Pool-Seq). It may be used for measuring differentiation between populations, f...
标签:Population genetics, Genomics
48. SequenceVariantAnalyzer
DNA sequence information underpins genetic research, enabling discoversies of important biological or medical benefit. Compared with previous discovery strategies, a whole-genome sequencing study is no longer constrained by differing patterns of linkage disequilibrium, thus, in theory, ...
标签:Personal genomics, Genomics,Sequence analysis
49. SplicingViewer
SplicingViewer is an integrated tool developed to enable users to detect the splice junctions, annotate alternative splicing events, and visualization of the patterns of alternative splicing events.
标签:RNA-Seq, Genomics
50. Syapse
Syapse is a platform and application suite for bringing together omics and clinical data.
标签:Allele-specific transcription,DNA methylation, DNA-Seq,InDel discovery, SNP discovery, Structural variation, RNA-Seq, Small RNA transcriptome, ChIP-Seq,Comparative genomics,Comparative transcriptomics,Epigenomics, Genomics,Personal genomics, Population ge
51. VirusSeq
We developed a new algorithmic method, VirusSeq, for detecting known viruses and their integration sites in the human genome using next-generation sequencing data. We evaluated VirusSeq on RNA-Seq data of 256 TCGA human cancer samples. Using these data, we showed that VirusSeq accuratel...
标签:Viral genomics
52. ZORRO
ZORRO is an hybrid sequencing technology assembler. It takes to sets of pre-assembled contigs and merge them into a more contiguous and consistent assembly. The main caracteristic of Zorro is the treatment before and after assembly to avoid errors.
标签:Genomic Assembly, Genomics