Bioinformatics

kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome

Gardner, S. N., Slezak, T., Hall, B. G..

Summary:We announce the release of kSNP3.0, a program for SNP identification and phylogenetic analysis without genome alignment or the requirement for reference genomes. kSNP3.0 is a significantly improved version of kSNP v2.

Availability and implementation: kSNP3.0 is implemented as a package of stand-alone executables for Linux and Mac OS X under the open-source BSD license. The executable packages, source code and a full User Guide are freely available at https://sourceforge.net/projects/ksnp/files/

Contact: barryghall@gmail.com